PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540892.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 477aa    MW: 52253.4 Da    PI: 8.7007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-065476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cgk F r  nL+ H r H
  XP_010540892.1 54 FVCEICGKGFQRDQNLQLHRRGH 76
                    89*******************88 PP

2zf-C2H219.52.6e-06132154123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC++C+k++  +s+ k H++t+
  XP_010540892.1 132 YKCEKCSKRYAVPSDWKAHMKTC 154
                     9********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.98E-85376No hitNo description
Gene3DG3DSA:3.30.160.601.3E-55476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6145476IPR007087Zinc finger, C2H2
SMARTSM003550.0125476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-6120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.98E-8127153No hitNo description
SMARTSM0035526132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MVAEDAISSG FVANPNPHQS LPLAKKKRNL PGNPDPEAEV IALSPNTLMA TNRFVCEICG  60
KGFQRDQNLQ LHRRGHNLPW KLKQRANKDA AVRKRVYVCP EKACVHHHPS RALGDLTGIK  120
KHFCRKHGDK KYKCEKCSKR YAVPSDWKAH MKTCGTREYR CDCGSVFSRR DSFITHRAFC  180
DALAEETARI NAVSQFTGGN YHHLMGTPLM FGPNTTSHNF SSLPKPIDYS LTDETRPASL  240
SLWTAQGQQT QNGIPMANSH ANPQAQFHQI GLMNSRSSLI NNDHNLISCS SNPQSFDNNY  300
NNLHNLNWVF GSKLSSSSNE EFIFGGNVNN KDATTVGVPS LYSKQHQITT GQAEPAAGNS  360
ATALLQKAAQ IGATTTDPSF LASFGLRTGN GPCTVLPVQD GNKYYGDMFG SNSMVTSLGS  420
DHDTENSTNE ISTLNQLPTQ PPAKRRRVEE GEGGGGGEGQ TRDFLGVGVE PMSHPWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1443447KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540892.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-142IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I00.0A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGPOPTR_0007s01380.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-136C2H2 family protein